Solo
Solo is a doublet detection tool, developped by Calico, moved to SCVI-tools. More information can be found at:
Solo implementation by SCVI-tools: Solo .
| Parameter | Description | Example |
|---|---|---|
| doublet_detection | TRUE to execute solo | –doublet_detection TRUE |
| umi_count | path to HTO matrix, same as HTODemux, no need to repeat | –umi_count /”path/hto_filtered/” |
| soft | True to return probabilities instead of class label | –soft False |
| max_epochs | probability for negatives | –max_epochs 100 |
| lr | learning rate | –lr 0.001 |
The description of this parameters were provided by the library. They can also be found in the link above.